@article{al12,
author = {Jesse Alama and Daniel K{\"u}hlwein and Evgeni Tsivtsivadze and Josef Urban and Tom Heskes},
title = {Premise Selection for Mathematics by Corpus Analysis and Kernel Methods},
journal = {Journal of Automated Reasoning},
note = {Conditionally accepted},
url = {http://arxiv.org/abs/1108.3446}
}
@article{cl12,
author = {Lennart Niels Cornelisse and Evgeni Tsivtsivadze and Marieke Meijer and Tjeerd M.D. Dijkstra and Tom Heskes and Matthijs Verhage},
title = {Molecular Machines in the Synapse: Overlapping Protein Sets Control Distinct Steps in Neurosecretion},
journal = {PLoS Computation Biology},
year = {2012},
note = {Minor revisions pending}
}
@article{pahik10,
author = {Tapio Pahikkala and Willem Waegeman and Evgeni Tsivtsivadze and Tapio Salakoski and Bernard De Baets},
title = {Learning Intransitive Reciprocal Relations with Kernel Methods},
journal = {European Journal of Operational Research},
year = {2010},
pages = {676-685},
volume = {206},
number = {3},
publisher = {Springer},
url = {http://www.sciencedirect.com/science/article/pii/S0377221710002171}
}
@inproceedings{ts10,
author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski and Tom Heskes},
title = {Co-Regularized Least-Squares for Label Ranking},
booktitle = {Preference Learning},
editor = {Eyke H{\"u}llermeier and Johannes F{\"u}rnkranz},
year = {2010},
pages = {107-123},
url = {http://www.springer.com/computer/ai/book/978-3-642-14124-9}
}
@article{ts08b,
author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski},
title = {Kernels for Text Analysis},
journal = {Advances of Computational Intelligence},
month = {May},
year = {2008},
publisher = {Springer Berlin / Heidelberg},
editor = {Ying Liu and Aixin Sun and Han Tong Loh and Wen Feng Lu and Ee-Peng Lim},
volume = {116},
pages = {81-97},
series = {Studies in Computational Intelligence},
url = {http://www.springerlink.com/content/v536117084857075/}
}
@article{ts09a,
author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski},
title = {Locality Kernels for Sequential Data and their Applications to Parse Ranking},
journal = {Applied Intelligence},
year = {2009},
pages = {81-88},
volume = {31},
number = {1},
publisher = {Springer},
url = {http://www.springerlink.com/content/v536117084857075/}
}
@article{pahik08,
author = {Tapio Pahikkala and Evgeni Tsivtsivadze and Antti Airola and Jouni J{\"a}rvinen and Jorma Boberg},
title = {An Efficient Algorithm for Learning to Rank from Preference Graphs},
journal = {Machine Learning},
volume = {75},
number = {1},
pages = {129--165},
publisher = {Springer},
year = {2009},
url = {http://www.springerlink.com/content/h2t2056225h85696/}
}
@inproceedings{kh11c,
author = {Daniel K{\"u}hlwein and Josef Urban and Evgeni Tsivtsivadze and Herman Geuvers and Tom Heskes},
title = {Multi-Output Ranking for Automated Reasoning},
booktitle = {International Conference on Knowledge Discovery and Information Retrieval},
year = {2011},
url = {publications/kdir11.pdf}
}
@inproceedings{kh11b,
author = {Daniel K{\"u}hlwein and Evgeni Tsivtsivadze and Josef Urban and Tom Heskes},
title = {Learning Semantics for Automated Reasoning},
booktitle = {NIPS Workshop on Learning Semantics},
editor = {Antoine Bordes and Jason Weston and Ronan Collobert and Leon Bottou},
year = {2011},
url = {publications/l2r_semantics.pdf}
}
@inproceedings{ts11,
author = {Evgeni Tsivtsivadze and Josef Urban and Herman Geuvers and Tom Heskes},
title = {Semantic Graph Kernels for Automated Reasoning},
booktitle = {SIAM International Conference on Data Mining},
year = {2011},
url = {http://siam.omnibooksonline.com/2011datamining/data/papers/231.pdf}
}
@inproceedings{kh11a,
author = {Daniel K{\"u}hlwein and Josef Urban and Evgeni Tsivtsivadze and Herman Geuvers and Tom Heskes},
title = {Learning2Reason},
booktitle = {Calculemus/MKM},
year = {2011},
pages = {298-300},
editor = {James H. Davenport and William M. Farmer and Josef Urban and Florian Rabe},
series = {Lecture Notes in Computer Science},
volume = {6824},
year = {2011},
url = {http://www.springerlink.com/content/h08t8k1048374761/}
}
@article{al11,
author = {Jesse Alama and Daniel K{\"u}hlwein and Evgeni Tsivtsivadze and Josef Urban and Tom Heskes},
title = {Premise Selection for Mathematics by Corpus Analysis and Kernel Methods},
journal = {CoRR},
volume = {abs/1108.3446},
year = {2011},
url = {http://arxiv.org/abs/1108.3446}
}
@inproceedings{ts10a,
author = {Evgeni Tsivtsivadze and Tom Heskes},
title = {Sparse Preference Learning},
booktitle = {NIPS Workshop on Practical Application of Sparse Modeling: Open Issues and New Directions},
editor = {Irina Rish and Alexandru Niculescu-Mizil and Guillermo Cecchi and Aurelie Lozano},
year = {2010},
url = {publications/spl.pdf}
}
@proceedings{td10,
editor = {Tjeerd Dijkstra and Evgeni Tsivtsivadze and Elena Marchiori and Tom Heskes},
title = {Pattern Recognition in Bioinformatics - 5th IAPR International
Conference, PRIB 2010, Nijmegen, The Netherlands, September
22-24, 2010. Proceedings},
booktitle = {PRIB},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
volume = {6282},
year = {2010},
isbn = {978-3-642-16000-4},
url = {http://www.springer.com/computer/bioinformatics/book/978-3-642-16000-4}
}
@inproceedings{ja10,
author = {Antolin Janssen and Evgeni Tsivtsivadze and Jorma Boberg and Tjeerd Dijkstra and Tom Heskes},
title = {Efficient Remote Homology Detection},
booktitle = {Pattern Recognition in Bioinformatics},
editor = {Tjeerd Dijkstra and Evgeni Tsivtsivadze and Elena Marchiori and Tom Heskes},
year = {2010},
url = {publications/49Janssen.pdf}
}
@inproceedings{ts09b,
author = {Evgeni Tsivtsivadze and Botond Cseke and Tom Heskes},
title = {Kernel Principal Component Ranking: Robust Ranking on Noisy Data},
booktitle = {ECML/PKDD-Workshop on Preference Learning (PL-09)},
editor = {Eyke H{\"u}llermeier and Johannes F{\"u}rnkranz},
year = {2009},
url = {publications/kpcr.pdf}
}
@inproceedings{Cor09,
author = { Niels Cornelisse and Evgeni Tsivtsivadze and Marieke Meijer and Tjeerd Dijkstra and Tom Heskes and Matthijs Verhage },
title = {Identification of Presynaptic Gene Clusters in Synaptic Signaling using Functional Data from Genetic Perturbation Studies in Hippocampal Autapses},
booktitle = {2nd INCF Congress of Neuroinformatics, Frontiers in Neuroinformatics},
year = {2009},
url = {http://www.frontiersin.org/10.3389/conf.neuro.11.2009.08.035/155/neuroinformatics_2009/all_events/event_abstract}
}
@inproceedings{pahik09,
author = {Tapio Pahikkala and Willem Waegeman and Evgeni Tsivtsivadze and Tapio Salakoski and Bernard De Baets},
title = {From Ranking to Intransitive Preference Learning: Rock-Paper-Scissors and beyond},
booktitle = {ECML/PKDD-Workshop on Preference Learning (PL-09)},
editor = {Eyke H{\"u}llermeier and Johannes F{\"u}rnkranz},
year = {2009},
url = {http://www.ke.tu-darmstadt.de/events/PL-09/02-Pahikkala.pdf}
}
@inproceedings{ts08d,
author = {Evgeni Tsivtsivadze and Fabian Gieseke and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski},
title = {Leanring Preferences with Co-Regularized Least Squares},
booktitle = {ECML/PKDD-Workshop on Preference Learning (PL-08)},
editor = {Eyke H{\"u}llermeier and Johannes F{\"u}rnkranz},
year = {2008},
pages = {55--62},
url = {http://www.mathematik.uni-marburg.de/~kebi/ws-ecml-08/5.pdf}
}
@inproceedings{ts08c,
author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Antti Airola and Jorma Boberg and Tapio Salakoski},
title = {A Sparse Regularized Least-Squares Preference Learning Algorithm},
booktitle = {Proceedings of the 10th Scandinavian Conference on Artificial Intelligence (SCAI 2008)},
publisher = {IOS Press},
editor = {Anders Holst and Per Kreuger and Peter Funk},
volume = {173},
pages = {76--83},
year = {2008},
url = {publications/srls.pdf}
}
@inproceedings{pahi08a,
author = {Tapio Pahikkala and Evgeni Tsivtsivadze and Antti Airola and Jorma Boberg and Tapio Salakoski},
title = {Regularized Least-Squares for Learning Non-Transitive Preferences between Strategies},
booktitle = {Proceedings of the 13th Finnish Artificial Intelligence Conference (STeP 2008)},
publisher = {IOS Press},
editor = {Tapani Raiko and Pentti Haikonen and Jaakko Vyrynen},
pages = {94--98},
year = {2008},
month = {August},
address = {Espoo}
}
@inproceedings{ts07,
author = {Evgeni Tsivtsivadze and Jorma Boberg and Tapio Salakoski},
title = {Locality Kernels for Protein Classification},
booktitle = {Proceedings of the 7th International Workshop on Algorithms in Bioinformatics, (WABI 2007)},
editor = {Raffaele Giancarlo and Sridhar Hannenhalli},
year = {2007},
pages = {2-11},
publisher = {Springer}
}
@inproceedings{pahik07,
author = {Tapio Pahikkala and Evgeni Tsivtsivadze and Antti Airola and Jorma Boberg and Tapio Salakoski},
title = {Learning to Rank with Pairwise Regularized Least-Squares},
booktitle = {Proceedings of the SIGIR 2007 Workshop on Learning to Rank for Information Retrieval},
editor = {Joachims, Thorsten and Li, Hang and Liu, Tie-Yan and Zhai, ChengXiang},
pages = {27-33},
year = {2007},
url = {publications/rrls.pdf}
}
@inproceedings{ts06,
author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski},
title = {Locality-Convolution Kernel and Its Application to Dependency Parse Ranking},
year = {2006},
pages = {610-618},
editor = {Moonis Ali and Richard Dapoigny},
booktitle = {Proceedings of the IEA/AIE 2006, Annecy, France},
publisher = {Springer},
series = {Lecture Notes in Computer Science},
volume = {4031},
url = {publications/LCK_kernel.pdf}
}
@inproceedings{pahik06,
author = {Tapio Pahikkala and Evgeni Tsivtsivadze and Jorma Boberg and Tapio Salakoski},
title = {Graph Kernels versus Graph Representations: a Case Study in Parse Ranking},
booktitle = {Proceedings of the ECML/PKDD'06 workshop on Mining and Learning with Graphs (MLG 2006)},
editor = {Thomas G{\"a}rtner and Gemma C. Garriga and Thorsten Meinl},
year = {2006},
address = {Berlin, Germany},
url = {http://www.inf.uni-konstanz.de/mlg2006/MLG2006.pdf}
}
@inproceedings{ts05,
author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Sampo Pyysalo and Jorma Boberg and Aleksandr Myll\"{a}ri and Tapio Salakoski},
title = {Regularized Least-Squares for Parse Ranking},
booktitle = {Proceedings of the Advances in Intelligent Data Analysis VI (IDA 2005)},
editor = {A. Fazel Famili and Joost N. Kok and Jos{\'e} Manuel Pe{\~n}a and Arno Siebes and A. J. Feelders},
pages = {464--474},
publisher = {Springer},
year = {2005},
url = {publications/inpTsPaPyBoMySa05a.pdf}
}
@inproceedings{gint05,
author = {Ginter, Filip and Pahikkala, Tapio and Pyysalo, Sampo and Tsivtsivadze, Evgeni and Boberg, Jorma and Jarvinen, Jouni and Myllari, Aleksandr and Salakoski, Tapio},
title = {Information Extraction from Biomedical Text: The BioText Project},
booktitle = {Proceedings of the Second Baltic Conference on Human Language Technologies (HLT 2005)},
publisher = {Institute of Cybernetics, Tallinn University of Technology and Institute of the Estonian Language},
editor = {Langemets, Margit and Penjam, Priit},
pages = {131--136},
year = {2005},
url = {publications/biotext.pdf}
}
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