% journal and book articles @article{al12, author = {Jesse Alama and Daniel K{\"u}hlwein and Evgeni Tsivtsivadze and Josef Urban and Tom Heskes}, title = {Premise Selection for Mathematics by Corpus Analysis and Kernel Methods}, journal = {Journal of Automated Reasoning}, note = {Conditionally accepted}, url = {http://arxiv.org/abs/1108.3446} } @article{cl12, author = {Lennart Niels Cornelisse and Evgeni Tsivtsivadze and Marieke Meijer and Tjeerd M.D. Dijkstra and Tom Heskes and Matthijs Verhage}, title = {Molecular Machines in the Synapse: Overlapping Protein Sets Control Distinct Steps in Neurosecretion}, journal = {PLoS Computation Biology}, year = {2012}, note = {Minor revisions pending} } @article{pahik10, author = {Tapio Pahikkala and Willem Waegeman and Evgeni Tsivtsivadze and Tapio Salakoski and Bernard De Baets}, title = {Learning Intransitive Reciprocal Relations with Kernel Methods}, journal = {European Journal of Operational Research}, year = {2010}, pages = {676-685}, volume = {206}, number = {3}, publisher = {Springer}, url = {http://www.sciencedirect.com/science/article/pii/S0377221710002171} } @inproceedings{ts10, author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski and Tom Heskes}, title = {Co-Regularized Least-Squares for Label Ranking}, booktitle = {Preference Learning}, editor = {Eyke H{\"u}llermeier and Johannes F{\"u}rnkranz}, year = {2010}, pages = {107-123}, url = {http://www.springer.com/computer/ai/book/978-3-642-14124-9} } @article{ts08b, author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski}, title = {Kernels for Text Analysis}, journal = {Advances of Computational Intelligence}, month = {May}, year = {2008}, publisher = {Springer Berlin / Heidelberg}, editor = {Ying Liu and Aixin Sun and Han Tong Loh and Wen Feng Lu and Ee-Peng Lim}, volume = {116}, pages = {81-97}, series = {Studies in Computational Intelligence}, url = {http://www.springerlink.com/content/p012g1v25g071017/} } @article{ts09a, author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski}, title = {Locality Kernels for Sequential Data and their Applications to Parse Ranking}, journal = {Applied Intelligence}, year = {2009}, pages = {81-88}, volume = {31}, number = {1}, publisher={Springer}, url = {http://www.springerlink.com/content/v536117084857075/} } @article{pahik08, author = {Tapio Pahikkala and Evgeni Tsivtsivadze and Antti Airola and Jouni J{\"a}rvinen and Jorma Boberg}, title = {An Efficient Algorithm for Learning to Rank from Preference Graphs}, journal = {Machine Learning}, volume = {75}, number = {1}, pages = {129--165}, publisher={Springer}, year = {2009}, url = {http://www.springerlink.com/content/h2t2056225h85696/} } % conference and workshop papers @inproceedings{kh11c, author = {Daniel K{\"u}hlwein and Josef Urban and Evgeni Tsivtsivadze and Herman Geuvers and Tom Heskes}, title = {Multi-Output Ranking for Automated Reasoning}, booktitle = {International Conference on Knowledge Discovery and Information Retrieval}, year = {2011}, url = {publications/kdir11.pdf} } @inproceedings{kh11b, author = {Daniel K{\"u}hlwein and Evgeni Tsivtsivadze and Josef Urban and Tom Heskes}, title = {Learning Semantics for Automated Reasoning}, booktitle = {NIPS Workshop on Learning Semantics}, editor = {Antoine Bordes and Jason Weston and Ronan Collobert and Leon Bottou}, year = {2011}, url = {publications/l2r_semantics.pdf} } @inproceedings{ts11, author = {Evgeni Tsivtsivadze and Josef Urban and Herman Geuvers and Tom Heskes}, title = {Semantic Graph Kernels for Automated Reasoning}, booktitle = {SIAM International Conference on Data Mining}, year = {2011}, url = {http://siam.omnibooksonline.com/2011datamining/data/papers/231.pdf} } @inproceedings{kh11a, author = {Daniel K{\"u}hlwein and Josef Urban and Evgeni Tsivtsivadze and Herman Geuvers and Tom Heskes}, title = {Learning2Reason}, booktitle = {Calculemus/MKM}, year = {2011}, pages = {298-300}, editor = {James H. Davenport and William M. Farmer and Josef Urban and Florian Rabe}, series = {Lecture Notes in Computer Science}, volume = {6824}, year = {2011}, url = {http://www.springerlink.com/content/h08t8k1048374761/} } @article{al11, author = {Jesse Alama and Daniel K{\"u}hlwein and Evgeni Tsivtsivadze and Josef Urban and Tom Heskes}, title = {Premise Selection for Mathematics by Corpus Analysis and Kernel Methods}, journal = {CoRR}, volume = {abs/1108.3446}, year = {2011}, url = {http://arxiv.org/abs/1108.3446} } @inproceedings{ts10a, author = {Evgeni Tsivtsivadze and Tom Heskes}, title = {Sparse Preference Learning}, booktitle = {NIPS Workshop on Practical Application of Sparse Modeling: Open Issues and New Directions}, editor = {Irina Rish and Alexandru Niculescu-Mizil and Guillermo Cecchi and Aurelie Lozano}, year = {2010}, url = {publications/spl.pdf} } @proceedings{td10, editor = {Tjeerd Dijkstra and Evgeni Tsivtsivadze and Elena Marchiori and Tom Heskes}, title = {Pattern Recognition in Bioinformatics - 5th IAPR International Conference, PRIB 2010, Nijmegen, The Netherlands, September 22-24, 2010. Proceedings}, booktitle = {PRIB}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, volume = {6282}, year = {2010}, isbn = {978-3-642-16000-4}, url = {http://www.springer.com/computer/bioinformatics/book/978-3-642-16000-4} } @inproceedings{ja10, author = {Antolin Janssen and Evgeni Tsivtsivadze and Jorma Boberg and Tjeerd Dijkstra and Tom Heskes}, title = {Efficient Remote Homology Detection}, booktitle = {Pattern Recognition in Bioinformatics}, editor = {Tjeerd Dijkstra and Evgeni Tsivtsivadze and Elena Marchiori and Tom Heskes}, year = {2010}, url = {publications/49Janssen.pdf} } @inproceedings{ts09b, author = {Evgeni Tsivtsivadze and Botond Cseke and Tom Heskes}, title = {Kernel Principal Component Ranking: Robust Ranking on Noisy Data}, booktitle = {ECML/PKDD-Workshop on Preference Learning (PL-09)}, editor = {Eyke H{\"u}llermeier and Johannes F{\"u}rnkranz}, year = {2009}, url = {publications/kpcr.pdf} } @inproceedings{Cor09, author = { Niels Cornelisse and Evgeni Tsivtsivadze and Marieke Meijer and Tjeerd Dijkstra and Tom Heskes and Matthijs Verhage }, title = {Identification of Presynaptic Gene Clusters in Synaptic Signaling using Functional Data from Genetic Perturbation Studies in Hippocampal Autapses}, booktitle = {2nd INCF Congress of Neuroinformatics, Frontiers in Neuroinformatics}, year = {2009}, url = {http://www.frontiersin.org/10.3389/conf.neuro.11.2009.08.035/155/neuroinformatics_2009/all_events/event_abstract} } @inproceedings{pahik09, author = {Tapio Pahikkala and Willem Waegeman and Evgeni Tsivtsivadze and Tapio Salakoski and Bernard De Baets}, title = {From Ranking to Intransitive Preference Learning: Rock-Paper-Scissors and beyond}, booktitle = {ECML/PKDD-Workshop on Preference Learning (PL-09)}, editor = {Eyke H{\"u}llermeier and Johannes F{\"u}rnkranz}, year = {2009}, url = {http://www.ke.tu-darmstadt.de/events/PL-09/02-Pahikkala.pdf} } @inproceedings{ts08d, author = {Evgeni Tsivtsivadze and Fabian Gieseke and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski}, title = {Leanring Preferences with Co-Regularized Least Squares}, booktitle = {ECML/PKDD-Workshop on Preference Learning (PL-08)}, editor = {Eyke H{\"u}llermeier and Johannes F{\"u}rnkranz}, year = {2008}, pages = {55--62}, url = {http://www.mathematik.uni-marburg.de/~kebi/ws-ecml-08/5.pdf} } @inproceedings{ts08c, author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Antti Airola and Jorma Boberg and Tapio Salakoski}, title = {A Sparse Regularized Least-Squares Preference Learning Algorithm}, booktitle = {Proceedings of the 10th Scandinavian Conference on Artificial Intelligence (SCAI 2008)}, publisher = {IOS Press}, editor = {Anders Holst and Per Kreuger and Peter Funk}, volume = {173}, pages = {76--83}, year = {2008}, url = {publications/srls.pdf} } @inproceedings{pahi08a, author = {Tapio Pahikkala and Evgeni Tsivtsivadze and Antti Airola and Jorma Boberg and Tapio Salakoski}, title = {Regularized Least-Squares for Learning Non-Transitive Preferences between Strategies}, booktitle = {Proceedings of the 13th Finnish Artificial Intelligence Conference (STeP 2008)}, publisher = {IOS Press}, editor = {Tapani Raiko and Pentti Haikonen and Jaakko Vyrynen}, pages = {94--98}, year = {2008}, month = {August}, address = {Espoo} } @inproceedings{ts07, author = {Evgeni Tsivtsivadze and Jorma Boberg and Tapio Salakoski}, title = {Locality Kernels for Protein Classification}, booktitle = {Proceedings of the 7th International Workshop on Algorithms in Bioinformatics, (WABI 2007)}, editor = {Raffaele Giancarlo and Sridhar Hannenhalli}, year = {2007}, pages = {2-11}, publisher = {Springer} } @inproceedings{pahik07, author = {Tapio Pahikkala and Evgeni Tsivtsivadze and Antti Airola and Jorma Boberg and Tapio Salakoski}, title = {Learning to Rank with Pairwise Regularized Least-Squares}, booktitle = {Proceedings of the SIGIR 2007 Workshop on Learning to Rank for Information Retrieval}, editor = {Joachims, Thorsten and Li, Hang and Liu, Tie-Yan and Zhai, ChengXiang}, pages = {27-33}, year = {2007}, url = {publications/rrls.pdf} } @inproceedings{ts06, author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Jorma Boberg and Tapio Salakoski}, title = {Locality-Convolution Kernel and Its Application to Dependency Parse Ranking}, year = {2006}, pages = {610-618}, editor = {Moonis Ali and Richard Dapoigny}, booktitle = {Proceedings of the IEA/AIE 2006, Annecy, France}, publisher = {Springer}, series = {Lecture Notes in Computer Science}, volume = {4031}, url = {publications/LCK_kernel.pdf} } @inproceedings{pahik06, author = {Tapio Pahikkala and Evgeni Tsivtsivadze and Jorma Boberg and Tapio Salakoski}, title = {Graph Kernels versus Graph Representations: a Case Study in Parse Ranking}, booktitle = {Proceedings of the ECML/PKDD'06 workshop on Mining and Learning with Graphs (MLG 2006)}, editor = {Thomas G{\"a}rtner and Gemma C. Garriga and Thorsten Meinl}, year = {2006}, address = {Berlin, Germany}, url = {http://www.inf.uni-konstanz.de/mlg2006/MLG2006.pdf} } @inproceedings{ts05, author = {Evgeni Tsivtsivadze and Tapio Pahikkala and Sampo Pyysalo and Jorma Boberg and Aleksandr Myll\"{a}ri and Tapio Salakoski}, title = {Regularized Least-Squares for Parse Ranking}, booktitle = {Proceedings of the Advances in Intelligent Data Analysis VI (IDA 2005)}, editor = {A. Fazel Famili and Joost N. Kok and Jos{\'e} Manuel Pe{\~n}a and Arno Siebes and A. J. Feelders}, pages = {464--474}, publisher = {Springer}, year = {2005}, url = {publications/inpTsPaPyBoMySa05a.pdf} } @inproceedings{gint05, author = {Ginter, Filip and Pahikkala, Tapio and Pyysalo, Sampo and Tsivtsivadze, Evgeni and Boberg, Jorma and Jarvinen, Jouni and Myllari, Aleksandr and Salakoski, Tapio}, title = {Information Extraction from Biomedical Text: The BioText Project}, booktitle = {Proceedings of the Second Baltic Conference on Human Language Technologies (HLT 2005)}, publisher = {Institute of Cybernetics, Tallinn University of Technology and Institute of the Estonian Language}, editor = {Langemets, Margit and Penjam, Priit}, pages = {131--136}, year = {2005}, url = {publications/biotext.pdf} }